Human Gut Cell Atlas - Normal Intestine and Crohn's Disease Mark Arends, David Adams, Richard Baldock, Albert Burger, Shahida Din and Irene PapatheodorouThis project will build a Gut Cell Atlas from human tissue samples, from which single-cell gene expression data and histopathological image cellular localization data will be generated ... A Journal Article is reported on in The Guardian, 27th March 2025 On 27th March 2025, The Guardian reported on work by our collaborators at Lyzeum Ltd, that was published in the New England Journal of Medicine Artificial Intelligence (NEJM AI), on the same day. Presentation delivered at the Crohn's Future Meeting on 22nd-23rd January 2025 Dr. Shahida Din gave a talk on the Edinburgh Helmsley Gut Cell Atlas project, to the Crohn's Future Meeting at the Edinburgh Futures Institute, held on 22nd-23rd January 2025. The Helmsley Gut Cell Atlas Crohn’s Disease Consortium Convening on 12th-13th September 2024 The Edinburgh Gut Cell Atlas Project delivered 1 talk and 1 poster at this meeting. Journal Article Accepted for Publication in New England Journal of Medicine Artificial Intelligence (NEJM AI) In July 2024, our collaborators at Lyzeum Ltd, had an article accepted for publication in the New England Journal of Medicine Artificial Intelligence (NEJM AI). Journal Article Accepted for Publication in BMJ Open Gastroenterology On 1st February 2024, our collaborators at Lyzeum Ltd, had an article accepted for publication in the BMJ Open Gastroenterology. "The Comparative Pathology Workbench: An Integrated Online Tool for Interactive Visual Analytics for Biomedical Data" Between 30th-31st January 2024, Mr Mike Wicks from the Edinburgh Helmsley Gut Cell Atlas Project, presented a Poster at the Winter Meeting of Pathological Society of Great Britain & Ireland in London, UK. The Helmsley Gut Cell Atlas Crohn’s Disease Consortium Convening, 28th-29th September 2023 The Edinburgh Gut Cell Atlas Project delivered 1 talk and 1 poster for this meeting. "The Comparative Pathology Workbench: Interactive Visual Analytics for Biomedical Data" On 4th August 2023, the Edinburgh Helmsley Gut Cell Atlas Project had an article accepted for publication in the Journal of Pathology Informatics Fibrostenosing Crohn’s Disease histological changes quantified by computational pathology image analysis using QuPath" Between 6th-8th July 2023, Dr Michael Glinka from the Edinburgh Helmsley Gut Cell Atlas Project, presented a Poster at the Dr Falk Foundation, Symposium 234, in Potsdam, Germany. "The Promise of Single-Cell RNA Sequencing to Redefine the Understanding of Crohn's Disease Fibrosis Mechanisms." On 5th June 2023, the Edinburgh Helmsley Gut Cell Atlas Project had an article accepted for publication in the Journal of Clinical Medicine. "A Roadmap for the Human Gut Cell Atlas." On 31st May 2023, the Edinburgh Helmsley Gut Cell Atlas Project had an article published in Nature Reviews Gastroenterology & Hepatology "Towards a clinically-based common coordinate framework for the human gut cell atlas: the gut models" On 13th January 2023, the Edinburgh Helmsley Gut Cell Atlas Project had an article accepted for publication in BMC Medical Informatics and Decision Making. This article was published on 2024-08-27
