Publications

Journal Articles

"Machine Learning Achieves Pathologist-Level Coeliac Disease Diagnosis",

Jaeckle F, Denholm J, Schreiber B, Evans SC, Wicks MN, Chan JYH, Bateman AC, Natu S, Arends MJ and Soilleux E

NEJM AI 2025; Volume 2, Number 4; DOI: 10.1056/AIoa2400738 Published on March 27th, 2025. 

(The above Journal Article was also reported on by The Guardian on March 27th 2025, in "Researchers develop AI tool that could speed up coeliac disease diagnosis" by Anna Bawden)

"CD, or not CD, that is the question: a digital interobserver agreement study in coeliac disease"

Denholm J, Schreiber BA, Jaeckle F, Wicks MN, Benbow EW, Bracey TS, Chan JYH, Farkas L, Fryer E, Gopalakrishnan K, Hughes CA, Kirkwood KJ, Langman G, Mahler-Araujo B, McMahon RFT, La Win Myint K, Natu S, Robinson A, Sanduka A, Sheppard KA, Tsang YW, Arends MJ, Soilleux EJ,

BMJ Open Gastroenterology 2024; 11: e001252. doi: 10.1136/bmjgast-2023-001252

Published in BMJ Open Gastroenterology on February 1, 2024.

"The Comparative Pathology Workbench: Interactive Visual Analytics for Biomedical Data"

Wicks MN, Glinka M, Hill B, Houghton D, Sharghi M, Ferreira I, Adams D, Din S, Papatheodorou I, Kirkwood K, Cheeseman M, Burger A, Baldock RA, and Arends MJ, 

Journal of Pathology Informatics, 2023, 100328, ISSN 2153-3539, https://doi.org/10.1016/j.jpi.2023.100328.

In Press in the Journal of Pathology Informatics, on 9th August 2023.

"The Promise of Single-Cell RNA Sequencing to Redefine the Understanding of Crohn's Disease Fibrosis Mechanisms."

Campbell I, Glinka M, Shaban F, Kirkwood KJ, Nadalin F, Adams D, Papatheodorou I, Burger A, Baldock RA, Arends MJ, Din S.

Journal of Clinical Medicine, 2023 Jun 7;12(12):3884. https://doi.org/10.3390/jcm12123884

Published in the Journal of Clinical Medicine, on 7th June 2023.

"A Roadmap for the Human Gut Cell Atlas."

Zilbauer M, James KR, Kaur M,  Pott A, Li Z, Burger A, Thiagarajah JR, Burclaff J, Johnson FL, Perrone F, Ross AD, Matteoli G, Stakenborg N, Sujino T, Moor A, Bartolome-Casado R, Bækkevold ES, Zhou R, Tie B, Lap KS, Din S, Magness ST, Yao Q, Beyaz A, Arends M, Denadai-Souza A, Coburn LA, Gaublomme JT, Baldock R, Papatheodorou I, et al.

Nature Reviews Gastroenterology & Hepatology, May 2023, 1–18. https://doi.org/10.1038/s41575-023-00784-1.

Published in Nature Reviews Gastroenterology & Hepatology, on 31st May 2023.

"Towards a Clinically-based Common Coordinate Framework for the Human Gut Cell Atlas - The Gut Models"

A Burger, R Baldock, DJ Adams, S Din, I Papatheodorou, M Glinka, B Hill, D Houghton, M Sharghi, M Wicks, MJ Arends, 

BMC Medical Informatics and Decision Making, Volume 23, Article number: 36 (2023), https://doi.org/10.1186/s12911-023-02111-9

Published in BMC Medical Informatics and Decision Making, on 15th February 2023.

Posters

A Poster was accepted at the Winter Meeting of the Pathological Society of Great Britain and Ireland, "Pathology and Precision Medicine”, 30th-31st January 2024, London, UK

A Poster was accepted at the Dr Falk Foundation, Symposium 234: "Mucosal Immunology A Translational View into the Clinic”, 6th-8th July 2023, Potsdam, Germany

2 Posters were accepted at the Helmsley Virtual Convening, 25th-26th October 2021